rs27896604 SNP Detail

Summary

• ID
  rs27896604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67394201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGCTG GCCTTTCTGG
  TTTTGGCATT GTTCTACAGT GGTTTTGACT CATGCTTGAA GTGAATGCCT TATTTTGAAT
  GTCTTCTTAA ACCCTAGGAT TCATCCTTTT CTACAGTGCC AATGTCTTTC ATTGCCCTGT
  CTCAATTTCA GCATAGATAA ATTTGCTTAA TTTAATTTTC ATTACATTTT GAGCACTCAG
  W
  GTTCAGGTTA AAGAGTTTCA TTGAATGAGA TTAAAAATAC ATTCTATAGA GTCTTTTTAA
  GTATTGGATT TACAATCCAT CTTAAATTTT GTGTGATGTC ATATAACAGT ACTTGTTTTC
  ATGTGGTTGT CCAGTGTGCT CATCTACCAC TGTTCATGTA AATGGCTCTC TTTTATCATC
  CAAACTTTGG TTTCATCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38038345	NES09377125	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	T	T	T	T	T
ss146469585	ENSMUSSNP3867772	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27896604					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38038345	NES09377125	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67394201 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	1149 bp proximal
Rr593795	regulatory region 593795	1613 bp proximal