rs27896603 SNP Detail

Summary

• ID
  rs27896603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67394750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCAAAT GAAATAGTGA
  ATAATAAATA ACTGATGGTT AAATATGGTT ATTAGTTTAA GCATATTATG CCTATGAAGT
  AAAAAGGAAA AAGCAAAGAA CAATGAGTGG TGTGGTAGAG AATTAAAGTG TTTGGGGTCT
  AAGAAGATAG GAAATCACTA TTCAAATAGG TCTTAAGGAA TGTTGCACTT TCTCCAGGAC
  R
  TGTATCTTCT CCACACATTC ATGGAGGCAT CAGTTGTCCT GGCTGACTGT TAGAAAAGAC
  TTGGAAAGTA TCAAATTATC TGGCTTGTAG TTTCCTGATG GTTAGAGGTT TTTTGCTTTT
  CCTTTGTCTT TTTCTCTCTC TTGTGACTGT GCAATGAAAA AAAAAAAAAA CTATTGAGTA
  AAAATGTAAC AGTTTGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38038344	NES09377126	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	G	A	G	A
ss146469600	ENSMUSSNP4753705	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27896603					SNP	G	G	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38038344	NES09377126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67394750 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	600 bp proximal
Rr593795	regulatory region 593795	1064 bp proximal