rs27896602 SNP Detail

Summary

• ID
  rs27896602
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67394799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGTTTA AGCATATTAT
  GCCTATGAAG TAAAAAGGAA AAAGCAAAGA ACAATGAGTG GTGTGGTAGA GAATTAAAGT
  GTTTGGGGTC TAAGAAGATA GGAAATCACT ATTCAAATAG GTCTTAAGGA ATGTTGCACT
  TTCTCCAGGA CATGTATCTT CTCCACACAT TCATGGAGGC ATCAGTTGTC CTGGCTGACT
  S
  TTAGAAAAGA CTTGGAAAGT ATCAAATTAT CTGGCTTGTA GTTTCCTGAT GGTTAGAGGT
  TTTTTGCTTT TCCTTTGTCT TTTTCTCTCT CTTGTGACTG TGCAATGAAA AAAAAAAAAA
  ACTATTGAGT AAAAATGTAA CAGTTTGCTT TTTTAGATTG TTGGAAAACA CATTGGATGC
  CTCAAAATGA AAAAAAAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38038343	NES09377127	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G	G	C	G	C	G
ss146469608	ENSMUSSNP3112070	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27896602					SNP	C	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38038343	NES09377127	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67394799 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	551 bp proximal
Rr593795	regulatory region 593795	1015 bp proximal