rs27896600 SNP Detail

Summary

• ID
  rs27896600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67395339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAACTAA CACCTCCGTG
  AGACCTAAGT GCCTGATTAG TATGGAAACT CTAAAGGAAA TAGAACAACT CTTAAGGAAA
  AGAACAATTT CCCTGGTTAT TCCCTCATGG TGAAAAGCAG AGAGGGTTGG AACTTGGCAT
  CTGAAAACTG TGAAATCCTA GGATTCAGGT TGTGCTCACT GAAGGGATGG ACTTGTGGGT
  Y
  TCGTGCGCTG TATTTCCCAG ATTGTCGATA AGAATTCCTG CAGAACACGG GTGTGGCATT
  AGGAACAGAT CAGTTTGGAA ACTGCTGTGT TTTCCTTGTC ATTTGCTCTC TGTGACCCTT
  TGCCATGTCC TCTGCTCTTC AGTTTTGCAT CCATTGAATG ACCTTCCCAC TGAGGATTAA
  TTTGTGGATG GGAAGTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38038341	NES09377129	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C
ss146469632	ENSMUSSNP679916	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27896600					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38038341	NES09377129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67395339 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	11 bp proximal
Rr593795	regulatory region 593795	475 bp proximal