rs27896599 SNP Detail

Summary

• ID
  rs27896599
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67395378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGGAAAC TCTAAAGGAA
  ATAGAACAAC TCTTAAGGAA AAGAACAATT TCCCTGGTTA TTCCCTCATG GTGAAAAGCA
  GAGAGGGTTG GAACTTGGCA TCTGAAAACT GTGAAATCCT AGGATTCAGG TTGTGCTCAC
  TGAAGGGATG GACTTGTGGG TCTCGTGCGC TGTATTTCCC AGATTGTCGA TAAGAATTCC
  K
  GCAGAACACG GGTGTGGCAT TAGGAACAGA TCAGTTTGGA AACTGCTGTG TTTTCCTTGT
  CATTTGCTCT CTGTGACCCT TTGCCATGTC CTCTGCTCTT CAGTTTTGCA TCCATTGAAT
  GACCTTCCCA CTGAGGATTA ATTTGTGGAT GGGAAGTGCT ATTCCACATG CAAATTGTAG
  AGCTCATTTG AATTAAAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38038340	NES09377131	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27896599					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38038340	NES09377131	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67395378 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	within coordinates
Rr593795	regulatory region 593795	436 bp proximal