rs27892616 SNP Detail

Summary

• ID
  rs27892616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62399561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTGGA AACTGGGGCC
  GGTGGAGTTC AGTTACTCAG GGATGGTGAA AATAGACTTG AGAAAAGTTG ATATAAATCA
  GCTTGCATCA TGGGTAAGGC TTTTACAAAT TCCTAAGGAC TTAGATACTT ATCATCGAGT
  TCCATCCAGG CTGAAGCGTG GGTTCTAACT AAGGTTTTTC AGACGAGGAA AAGGGCCCAC
  R
  GGAGGATGGT AACTCTTAAT AGTCAGGGTT TAAGAGGGGG AGATTCATTG ACCGGGCAAG
  AGGAAACCAC TTTTTGATCT CAGTGGTTAT GAAGAGGAAG TGACCTCATG GAAAACCTTG
  AAAGTAGCCT TCATGCCTGT ATGAGTGGTG AGAGGGGTGA AGGCCAGGGC AGGAGAGCAA
  GCTTGGTACT CTGCCCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056636	NES09396859	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892616					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056636	NES09396859	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62399561 () rs orientation: forward

Symbol	Name	Function Class
Bspry	B-box and SPRY domain containing	Intron
Cpgi14360	CpG island 14360	624 bp distal
Rr593317	regulatory region 593317	1261 bp distal
Rr593318	regulatory region 593318	1542 bp distal
Rr593319	regulatory region 593319	1504 bp distal
Rr593320	regulatory region 593320	1690 bp proximal
Tssr37492	transcription start site region 37492	1226 bp downstream