rs27892615 SNP Detail

Summary

• ID
  rs27892615
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62399609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAGACT TGAGAAAAGT
  TGATATAAAT CAGCTTGCAT CATGGGTAAG GCTTTTACAA ATTCCTAAGG ACTTAGATAC
  TTATCATCGA GTTCCATCCA GGCTGAAGCG TGGGTTCTAA CTAAGGTTTT TCAGACGAGG
  AAAAGGGCCC ACAGGAGGAT GGTAACTCTT AATAGTCAGG GTTTAAGAGG GGGAGATTCA
  K
  TGACCGGGCA AGAGGAAACC ACTTTTTGAT CTCAGTGGTT ATGAAGAGGA AGTGACCTCA
  TGGAAAACCT TGAAAGTAGC CTTCATGCCT GTATGAGTGG TGAGAGGGGT GAAGGCCAGG
  GCAGGAGAGC AAGCTTGGTA CTCTGCCCCG GGTGCCTTCC CTGAGCTACC CTAACACCTT
  ACACCCAGCC TTGGTGTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056635	NES09396860	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892615					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056635	NES09396860	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62399609 () rs orientation: forward

Symbol	Name	Function Class
Bspry	B-box and SPRY domain containing	Intron
Cpgi14360	CpG island 14360	672 bp distal
Rr593317	regulatory region 593317	1309 bp distal
Rr593318	regulatory region 593318	1590 bp distal
Rr593319	regulatory region 593319	1552 bp distal
Rr593320	regulatory region 593320	1642 bp proximal
Tssr37492	transcription start site region 37492	1274 bp downstream