rs27892613 SNP Detail

Summary

• ID
  rs27892613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62399928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGAGA GCAAGCTTGG
  TACTCTGCCC CGGGTGCCTT CCCTGAGCTA CCCTAACACC TTACACCCAG CCTTGGTGTA
  AGGGAAGTGA GTCTTGCCAT CTTTCTTTTT ACTTTAGAGT TTTGGGTTGT TTTGTTTTGT
  TTTGTTTTTG ATGCTGTGTT TAACCAGAGC CTCATGTATT TTAGATCACT GAGCTGCATG
  Y
  CCAGCCCTAG AGTTTACAAT GCTTCCAGCA TCCTCCTCCT ATCCCTCCAT CCTGTAGAGA
  GATTGTCTCT GGAGCATAAT CATTACTGAC CTGGACAAAA TAGGACTAGT TCAACTGCTC
  TTAGCTTCTG GATTCATGCC TTGAAGCTAG TTAGAAGCCA GGCTCAAGGT AGGATCCAGC
  CTAGGTACCC ATTAGTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056633	NES09396862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892613					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056633	NES09396862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62399928 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bspry	B-box and SPRY domain containing			Coding-NonSynonymous
				Intron
Cpgi14360	CpG island 14360			991 bp distal
Rr593317	regulatory region 593317			1628 bp distal
Rr593318	regulatory region 593318			1909 bp distal
Rr593319	regulatory region 593319			1871 bp distal
Rr593320	regulatory region 593320			1323 bp proximal
Tssr37492	transcription start site region 37492			1593 bp downstream