rs27892532 SNP Detail

Summary

• ID
  rs27892532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62419523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAAGCC AGAAGAAGGT
  GTCAAATGCC CTGGAACTGG AATTTCAGAC ATTTGTGAGC TGTCACATGG GTGCTGGGAA
  TCGAACCTGG GTCCTCTGGA AGAACAGCAG TGCTATTAAC TTCTGGGCCA TCTCTCCAGC
  CCATGACCCT TTTACAATTA TTAGAAAATG GTGCCCTTGT TTAAGAAACC CATATTTATA
  Y
  TTGAGTATGC TTGACTTTCC TCAGAGTCCT TCTTTCCCCC CTAACCCTCA TGCTTAATCC
  TGCATTAAAA TGTTATTAAT AAAATTTCCA ACTTGGCTTC ATTTAAAAAA ATTACTAGTA
  ATGTCAAAAA AGAGAAAGGT TCCTGGAGAC TCTGACCAAC AACATAACTG GTGAGGAGCT
  GGTGGAACCA GAGAGGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38056552	NES09396418	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27892532					SNP	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056552	NES09396418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62419523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			630 bp proximal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			64 bp distal
Rr593325	regulatory region 593325			146 bp proximal
Rr593326	regulatory region 593326			980 bp proximal
Tssr42008	transcription start site region 42008			890 bp downstream
Tssr42009	transcription start site region 42009			914 bp downstream
Tssr42010	transcription start site region 42010			947 bp downstream