rs27892530 SNP Detail

Summary

• ID
  rs27892530
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62419974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTGCCT TTGCTTACCC
  ATGTTTATAT TCTTTTAAAA GTTGGATTAT GTTGAGCCTG GGAAGAGTGG GACAGAAGAC
  AGTCCGTTCC AACTTGGCTC TGAGCTGCAA GTTCTCCCTG GAGTTATTAG TGCCAAATAC
  CCAACTGTCA GTTCTCTGCC TGGAGTCAGA GACTGATTGC AGGTTTGTCT CCAGACAGAG
  S
  GGACTGCTTA GCTGTGTCTT TCAATCTGTG GGGTCCGGGG TTCATTCAGA ATGCAGCCAA
  ACAAAACAGA GGTGAGGAGG GGTGTGGGGG CGGGGCGCGT AAAGAAATGT GACAAAGAAG
  AGATTTAAGT CAGCTCGAAA TAGTGAGACA ACTTTAAAAG GGCTCTCATC GAGCAGGTAG
  GTAGGCTGAG GCCCAGCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056550	NES09396420	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892530					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056550	NES09396420	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62419974 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			179 bp proximal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			515 bp distal
Rr593325	regulatory region 593325			within coordinates
Rr593326	regulatory region 593326			529 bp proximal
Tssr42008	transcription start site region 42008			439 bp downstream
Tssr42009	transcription start site region 42009			463 bp downstream
Tssr42010	transcription start site region 42010			496 bp downstream