rs27892527 SNP Detail

Summary

• ID
  rs27892527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62420634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGGCTCT ATGTAGGCGA
  TCAGTAGCTC GCGACCCTCG GACTTGCCAT TGATTCTCGC CCCGCCCCAC TCTAGGCGTC
  ACCAAGCTCC TCCCTCGCGC CCGTCACTCG CCACGCTGAG TCTTGGGCCT CTTGTCCCTT
  AGGTTACCCC GTAGCTTCCC TGCTCCCTGT CTCACGCCCT CTCACCGTCC CCTGGCTTCT
  Y
  AAGGTCACTG TCTCACCCCT CATCACGTTC CTCCCCACTG CCCTTATACT CATTATCACA
  ACCCAGGTGT TCTCTTTGCT TCTCATCTCT ATCCCCCGGC CCCCGCCTCC GTGGGATGGA
  GACACTTAGG GGACCTAGAC TAACTTGGGA ATGGCAATGG CGGGGAGTGG GGTTAGGGCT
  CAGGCCGGCT CCCCAAACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056546	NES09396424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892527					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056546	NES09396424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62420634 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			within coordinates
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			1175 bp distal
Rr593325	regulatory region 593325			132 bp distal
Rr593326	regulatory region 593326			within coordinates
Tssr42008	transcription start site region 42008			215 bp upstream
Tssr42009	transcription start site region 42009			171 bp upstream
Tssr42010	transcription start site region 42010			137 bp upstream