rs27892525 SNP Detail

Summary

• ID
  rs27892525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGGTTTT AAGATAGGGT CTCACTATGC AGGCAAACGG
  GTCCTGAGCA TCTTCCTGCC TCAGCCTCCC AAGTGCTGGG ATAATGGGCG TGCCACCGCC
  R
  TGTCTGTCTA ACCTAGTTTC TCTCTGTAAA AAAACAAAAA ACAAAAAACA AACAAACATT
  TAAAGGAAAG AAGAGTTTCC CTTTAAATGC GGTTTTCATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38056544	NES09396427	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27892525					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056544	NES09396427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421047 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			300 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			1588 bp distal
Rr593325	regulatory region 593325			545 bp distal
Rr593326	regulatory region 593326			44 bp distal
Tssr42008	transcription start site region 42008			628 bp upstream
Tssr42009	transcription start site region 42009			584 bp upstream
Tssr42010	transcription start site region 42010			550 bp upstream