rs27892523 SNP Detail

Summary

• ID
  rs27892523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGGGG CAGGAGGGCT
  TCCCTCTGCT CTTTTCTTCC CCTCCCCCAC AGGTACCCTC TTAAAACATC TTCTGTTATC
  TCCTGGCTCT GTGGACTTTA GATGGACTCA ACTCCCTCTC CCTGGGCCTC AGAAAGCAAA
  GTGCAAAGTC ACAGAGCAGT CAGCTCACCT GCCAGACTGG TTTTGCCGAA CAAGCTTGCT
  Y
  CTCAGAAATG GAGGTAGAAA GGATAGCCAG GACATCAGAG GCCCACCTGT TCTTCAGAGA
  ATCCTGGAAT CCCTGACTGT ATCTCTTTTC AGGGTCACCT CAAACCTAAG CCTGTAGGTT
  CTGATTCCAA CTCTGCCACC CTGGAGACTA GACACGAGTA ACTTAGTAAA GCTAGAATCC
  AGGCTAGCTT TAAGTAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056542	NES09396431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892523					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056542	NES09396431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	829 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	Noncoding-Transcript-Variant
Rr593325	regulatory region 593325	1074 bp distal
Rr593326	regulatory region 593326	573 bp distal
Tssr42008	transcription start site region 42008	1157 bp upstream
Tssr42009	transcription start site region 42009	1113 bp upstream
Tssr42010	transcription start site region 42010	1079 bp upstream