rs27892520 SNP Detail

Summary

• ID
  rs27892520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTGGG CCTCAGAAAG
  CAAAGTGCAA AGTCACAGAG CAGTCAGCTC ACCTGCCAGA CTGGTTTTGC CGAACAAGCT
  TGCTCCTCAG AAATGGAGGT AGAAAGGATA GCCAGGACAT CAGAGGCCCA CCTGTTCTTC
  AGAGAATCCT GGAATCCCTG ACTGTATCTC TTTTCAGGGT CACCTCAAAC CTAAGCCTGT
  M
  GGTTCTGATT CCAACTCTGC CACCCTGGAG ACTAGACACG AGTAACTTAG TAAAGCTAGA
  ATCCAGGCTA GCTTTAAGTA GATTTCCAAG ATAATCAATG TCAGCTGCCA TTTGGTAGGT
  CTCTCCATGT GCTGTTGGCA CAGTGACAGA TGGTTGATAT CAAGTCAGAT CACACAGAAA
  ACCTCTTTGA GCATTTAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38056539	NES09396436	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27892520					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056539	NES09396436	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	945 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	Noncoding-Transcript-Variant
Rr593325	regulatory region 593325	1190 bp distal
Rr593326	regulatory region 593326	689 bp distal
Tssr42008	transcription start site region 42008	1273 bp upstream
Tssr42009	transcription start site region 42009	1229 bp upstream
Tssr42010	transcription start site region 42010	1195 bp upstream