rs27892519 SNP Detail

Summary

• ID
  rs27892519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTGCCAT TTGGTAGGTC TCTCCATGTG
  CTGTTGGCAC AGTGACAGAT GGTTGATATC AAGTCAGATC ACACAGAAAA CCTCTTTGAG
  CATTTAAGAA GATTCTTTTC AGGAGAGAAA ACAGACTTCT AGGTGCTTAA GGGTTTTGTT
  Y
  CAGGTCACAT ACTACACAGC ACGCTGCCCA TCTCCAAAGA GGGTTTGCCA GCGTGTATTG
  ATTGGCTCAC CTGGGCCAAT GACCTTGACC TAACTGTTGG GCCACTAGAA TCTACTTTTT
  ATTGTCTCTA GGTTAGCAGC AGCAAGGAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38056538	NES09396438	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	T		T
ss321142490	CHEV_4_62164741	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27892519					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056538	NES09396438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1197 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1507 bp upstream
Rr593325	regulatory region 593325	1442 bp distal
Rr593326	regulatory region 593326	941 bp distal
Rr593327	regulatory region 593327	1753 bp proximal
Tssr42008	transcription start site region 42008	1525 bp upstream
Tssr42009	transcription start site region 42009	1481 bp upstream
Tssr42010	transcription start site region 42010	1447 bp upstream