rs27892518 SNP Detail

Summary

• ID
  rs27892518
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTAGATT TCCAAGATAA
  TCAATGTCAG CTGCCATTTG GTAGGTCTCT CCATGTGCTG TTGGCACAGT GACAGATGGT
  TGATATCAAG TCAGATCACA CAGAAAACCT CTTTGAGCAT TTAAGAAGAT TCTTTTCAGG
  AGAGAAAACA GACTTCTAGG TGCTTAAGGG TTTTGTTTCA GGTCACATAC TACACAGCAC
  R
  CTGCCCATCT CCAAAGAGGG TTTGCCAGCG TGTATTGATT GGCTCACCTG GGCCAATGAC
  CTTGACCTAA CTGTTGGGCC ACTAGAATCT ACTTTTTATT GTCTCTAGGT TAGCAGCAGC
  AAGGAACAAT ACACAGATAA ATAGCCTGGG ATGTCATAGG AAAGATGGTG GTGGTCTTTG
  ATATTCTGAA TCTAGCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38056537	NES09396441	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	G
ss321142491	CHEV_4_62164764	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27892518					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056537	NES09396441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1220 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1530 bp upstream
Rr593325	regulatory region 593325	1465 bp distal
Rr593326	regulatory region 593326	964 bp distal
Rr593327	regulatory region 593327	1730 bp proximal
Tssr42008	transcription start site region 42008	1548 bp upstream
Tssr42009	transcription start site region 42009	1504 bp upstream
Tssr42010	transcription start site region 42010	1470 bp upstream