rs27892425 SNP Detail

Summary

• ID
  rs27892425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62441304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGTGCT ACATTCCTGA
  GCACCATTCC TCTTACCGTA AGGTTCAGAG GTGTTCTCAA CTCTCTTTAG AAGGCAGGAG
  ATTAGGACTA AGGAATCTGA GGACCTTGCA CTTTGGAATA TGACATATGT TATCAGAGTC
  CCTAGACTAG AAGATGAAAT AAGTAAGAGG AGGAGAAAGC CGGGCTGGGA AGCAGAAGCC
  R
  GAGAGATGGA GACAGAACAG GCTGTGCCTG GAAGAAATAA AGTCTCTGGA ACTTGTTATG
  AGCCCAGGGA ATGAAAAGCA GCAGCCATAA GTCTGGGAGA TGGATCTGGG ATTTTATACC
  TTCCAGGAGG TAGCACTAGG ACCTACCATG GCAGGCACTG AGTTACCTCC AAGATTAAGC
  CCCTGCTTTT AAGAATTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056444	NES09395638	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892425					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056444	NES09395638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62441304 () rs orientation: forward

Symbol	Name	Function Class
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	mRNA-UTR
Rr367636	regulatory region 367636	1954 bp upstream
Rr593339	regulatory region 593339	1714 bp proximal
Rr593340	regulatory region 593340	1991 bp proximal
Tssr42018	transcription start site region 42018	1329 bp downstream
Tssr42019	transcription start site region 42019	1715 bp downstream
Tssr42020	transcription start site region 42020	1777 bp downstream
Tssr42021	transcription start site region 42021	1969 bp downstream