rs27892424 SNP Detail

Summary

• ID
  rs27892424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62441445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACTAGA AGATGAAATA
  AGTAAGAGGA GGAGAAAGCC GGGCTGGGAA GCAGAAGCCA GAGAGATGGA GACAGAACAG
  GCTGTGCCTG GAAGAAATAA AGTCTCTGGA ACTTGTTATG AGCCCAGGGA ATGAAAAGCA
  GCAGCCATAA GTCTGGGAGA TGGATCTGGG ATTTTATACC TTCCAGGAGG TAGCACTAGG
  W
  CCTACCATGG CAGGCACTGA GTTACCTCCA AGATTAAGCC CCTGCTTTTA AGAATTGGCA
  CCTTTTTTGA CAGATTCTAA TCAACACTCA GAATTAAAGA GTGTGTGTCC TATGAGTGCA
  GCCACCCCAG ACGACTGAGC ATCTACAGTC ACTAGAGGAC TACAAAGCTA AGTAAGTCTA
  GAAAGCCAGA CACCAAGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056443	NES09395639	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892424					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056443	NES09395639	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62441445 () rs orientation: forward

Symbol	Name	Function Class
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	mRNA-UTR
Rr367636	regulatory region 367636	1813 bp upstream
Rr593339	regulatory region 593339	1573 bp proximal
Rr593340	regulatory region 593340	1850 bp proximal
Tssr42018	transcription start site region 42018	1188 bp downstream
Tssr42019	transcription start site region 42019	1574 bp downstream
Tssr42020	transcription start site region 42020	1636 bp downstream
Tssr42021	transcription start site region 42021	1828 bp downstream