rs27892420 SNP Detail

Summary

• ID
  rs27892420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62443240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCCATTCG CCAGCCCGAG CGGCTCACCG CCTCCTTGAT
  GATCCTGGTG ATGACGGCGT TGGGCAGATT TAGGTCCTCG GGCCTCTCCG CCATTGCCTC
  Y
  GCTGGGGCCC GACCCTCCTG CTCAGGTCTC CAGACAGTTC TGGTGTCTGG ACTTCCCGCG
  TCGCTAAAAT ATGACCCTCG GAGGCTTCCG TCCTACCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056439	NES09395579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892420					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056439	NES09395579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62443240 () rs orientation: forward

Symbol	Name	Function Class
4933430I17Rik	RIKEN cDNA 4933430I17 gene	366 bp upstream
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)	mRNA-UTR
Rr367636	regulatory region 367636	18 bp upstream
Rr593339	regulatory region 593339	201 bp distal
Rr593340	regulatory region 593340	55 bp proximal
Rr593341	regulatory region 593341	377 bp proximal
Tssr37493	transcription start site region 37493	615 bp upstream
Tssr42018	transcription start site region 42018	591 bp upstream
Tssr42019	transcription start site region 42019	198 bp upstream
Tssr42020	transcription start site region 42020	153 bp upstream
Tssr42021	transcription start site region 42021	33 bp downstream