rs27892418 SNP Detail

Summary

• ID
  rs27892418
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62444902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCATTTCA GTTTTTAAAA
  CATTGGCTCA AAGTGCTTGC CAAGCTAAGT AGGCCAGGTG CAGCCCAGGC CACTAGATTC
  CTATCTCTAA TTTAAATTAG AAGCTGTTTA GAACAGAGAG ATTGTTTATT GCTACTCTCT
  ACGCCCCAAA CAGGTCCACT CATTTGACAG TCAGTAAATG TGTTGAATAG AAGAAGAAAC
  S
  GACAATGTCC TTAAAAGTTA GAAAGGGGAC AGGGTGAGAT GACTCAGTGG ATGAAGACAC
  TTTTGGGTTG AAGACTGTGT AGTCTCTGGG CTCATTTCAG GATGGCCTTC CTGCTGACCT
  TCTCATGTGC CCCATGGCAC CCATGCCCAC CAAAGAAATG AATACAATGG AATTATATGT
  TAAAAGGAAT AAGATAGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38056437	NES09395489	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27892418					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38056437	NES09395489	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62444902 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4933430I17Rik	RIKEN cDNA 4933430I17 gene			Intron
				Noncoding-Transcript-Variant
Pole3	polymerase (DNA directed), epsilon 3 (p17 subunit)			1597 bp upstream
Rr367636	regulatory region 367636			1332 bp downstream
Rr593339	regulatory region 593339			1863 bp distal
Rr593340	regulatory region 593340			1286 bp distal
Rr593341	regulatory region 593341			751 bp distal
Tssr37493	transcription start site region 37493			1043 bp downstream
Tssr42019	transcription start site region 42019			1860 bp upstream
Tssr42020	transcription start site region 42020			1815 bp upstream
Tssr42021	transcription start site region 42021			1585 bp upstream