rs27883980 SNP Detail

Summary

• ID
  rs27883980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63539284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAGGAT AGCTGGTGTC
  AGTGGTAAAG ATTTGGACAA GCTTAGAGGG TCTTCCTACA ACTAGGATTG AGGGAGCAGG
  GGGAGGTAAC ACAGAGAGGG GAAAAGGGTA TCCACAAATC CTAGGCACAG ACCTACTTCC
  CTGGGAAGAT GCTAACAGAT TATCACAAGT CATCTATTAA TGAAAGTGCT ACTGGCCAAT
  M
  TGATGGAAGA GTTGCACACT GTTGTCATCT CATACTAGAA GGTCCTAGAT GCCCAAGTGC
  CTCTTGTCTC TGGAATCCTA GCAGTTGGTA GGTAGCCTTA GTGCCTCCCC AGACCCTTAT
  GCACTGGCTA TAAAGCTCTC TTCTATCTGT GGTGAAAACA CAGCTCTCCA TTTAACTGGA
  AACAAACTCC ATTTCTGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38052399	NES09400388	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27883980					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38052399	NES09400388	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63539284 () rs orientation: forward

Symbol	Name	Function Class
Rr593585	regulatory region 593585	1509 bp proximal
Rr593586	regulatory region 593586	1585 bp proximal
Tex48	testis expressed 48	Intron
Tssr42062	transcription start site region 42062	1367 bp downstream
Tssr42063	transcription start site region 42063	1374 bp downstream