rs27883970 SNP Detail

Summary

• ID
  rs27883970
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63540222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTATGAT TATTTCATAG
  AAAAATAATA TATAGCGTCT TAAAACCTCA GCTCTTTGAT CTGTAACCTG GAAATCCCAA
  AGCAAAGCAA AGCAAAGCAA AGCAAAGCAA AGCAAAGCAA AGCAAAGCAA AGCAAAGCAA
  AGCAAAGTGG CATGTGAAGA CTCAGAGCAA TGGAAAGTGG CCTGCACAGC TTTCTGGCAT
  K
  CTGTGAAGCC TCAGAATGTA AGAGATGCTG GTGTTGAAGT GGAGGAGGGC GGAGACTTTC
  ATGCAGTACT ATGACCCATC TCTAGATGGG GACAAGAGTC AAAGAAGAGG CTCTTGGTTT
  GTCCTGTCCT ATTTAAGTTT CAGGTCTCCG GAGACTTCAG AACATGCTGA CCAGGTGAAG
  CAAGGTCACT AAGGTGAAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38052389	NES09400247	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27883970					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38052389	NES09400247	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63540222 () rs orientation: forward

Symbol	Name	Function Class
Rr593585	regulatory region 593585	571 bp proximal
Rr593586	regulatory region 593586	647 bp proximal
Tex48	testis expressed 48	Intron
Tssr42062	transcription start site region 42062	429 bp downstream
Tssr42063	transcription start site region 42063	436 bp downstream