rs27882334 SNP Detail

Summary

• ID
  rs27882334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63776681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAACAAT TCAAGGGCAG
  GGAGTGGATT TGCCTCAAGG TTTTGGTTAG GTTTACGTAC CCAGTGTCTA TAACAGTGCC
  CAGTACAAAT AGATACTCAG TAAATACTGA GTTGATGCCT CAGTTTCCCC TTTGTCTCCA
  CTATAGCGAT TTCTTCCTCT AGCAAAATCT CAAGGATCCC AGCTCACTTT CCTGACATGG
  Y
  TAACTCTCCC TTCTCCATCT CTTTTCTCAT CTCTGCAGTG GTGCAGGTGG GGCCTCTATT
  CTCATCTCTT CCATTCCTTG AAAGTTATTC ATATTTCTCA CTCTGACCAG ATACTGTAGT
  TTCCAGTGAT GTTTTCTTGC AGTCTGCTGG GGAACTACTG CTTCACAGGT GGTCTCGAGG
  TGGTCCTACA TAGGGCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38051557	NES09390632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27882334					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051557	NES09390632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63776681 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	1272 bp proximal
Rr593619	regulatory region 593619	1856 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron