rs27882333 SNP Detail

Summary

• ID
  rs27882333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63776930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGAACTAC TGCTTCACAG GTGGTCTCGA GGTGGTCCTA
  CATAGGGCAG TAAGGTAAAC CTCACAGTTC CCCACACAGT CCCTGTGGTA CAAGGAGGAC
  R
  CCATGTGTTC ATTGCCCATT CCATATTTAA TACTAGAATG CGAGTCTGAG CTCTTTGGAT
  CTTTTCATTG GGTTCTTTGA CAGATTCCTA CTGAGTCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38051556	NES09390633	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	A	G
ss146447361	ENSMUSSNP691762	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27882333					SNP	A	A	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051556	NES09390633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63776930 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	1023 bp proximal
Rr593619	regulatory region 593619	1607 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron