rs27882331 SNP Detail

Summary

• ID
  rs27882331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63777022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGCTGG GGAACTACTG
  CTTCACAGGT GGTCTCGAGG TGGTCCTACA TAGGGCAGTA AGGTAAACCT CACAGTTCCC
  CACACAGTCC CTGTGGTACA AGGAGGACAC CATGTGTTCA TTGCCCATTC CATATTTAAT
  ACTAGAATGC GAGTCTGAGC TCTTTGGATC TTTTCATTGG GTTCTTTGAC AGATTCCTAC
  Y
  GAGTCTCTCC AGTTGCTAAG TTCACCTGTT TGTAACAGTC CCCATCTGCC TTCCTATGGG
  ATGTACTCTT AATAACCCAG GCCCAGGGGA CTCATTTTTC CCCAGTTCTT GCCACAGTTA
  ATGCCTGATA ATGTACTAGA AACGATATGC GAAAAGCGTT AGATTCTTAA TAGCATAGCC
  ATTAAAATGG AAAGCCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38051554	NES09390635	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27882331					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051554	NES09390635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63777022 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	931 bp proximal
Rr593619	regulatory region 593619	1515 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron