rs27882327 SNP Detail

Summary

• ID
  rs27882327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63777363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACTAGAGC TTACACACAG ACTGTGCACC GTTCTATACC
  CAGGCACGGA GGTAAGTCAG ATCAACAGAC ACAAGAGGAA AAATCTCTGA GAGAAGAATG
  R
  GAATGTTTCT GCCACCATCA GGGCAAGCAA AGGGAACAGC ATTCTCACAG AGCAACCAAG
  AGCCACTAAG CAGCCCCTAC TGTACCACTT GCTCAGGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38051550	NES09390639	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	A	G	G	A	G	A	A	A	G
ss146447377	ENSMUSSNP4778906	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27882327					SNP	A	A	A	A	A	A	A	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051550	NES09390639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63777363 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	590 bp proximal
Rr593619	regulatory region 593619	1174 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron
Tssr42075	transcription start site region 42075	1766 bp downstream
Tssr42076	transcription start site region 42076	1797 bp downstream
Tssr42077	transcription start site region 42077	1903 bp downstream
Tssr42078	transcription start site region 42078	1974 bp downstream