rs27882319 SNP Detail

Summary

• ID
  rs27882319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63778823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTCCTG GGAGCACGGA
  TTGAGGACAT AACCTTAGAA TTAGGATGAG CGCCTTACAG AGGTGATACC CACATGCGCA
  CTCGCCATCA GGGCTCCCTA TGCTTCCTCC CTCCATACTG TGAGGCTGTG ACCCATCTGG
  GCTTCAATCT TAACTTCTCA AGGTCAGCAG CTCTTCTGTT GGCTCCAGTA CATCTGGAAA
  W
  TTTTGAGCTC ATGTCCAGTT CTATTTCTTT TAAAAAATTC CCACTGAGTG CAGAAAGTTC
  ATTTCTAGTT TTTCCCCTTT TCTCTGATAT AATCTCTCTC TATATATGCA TAGTTTTACT
  TATTTTCACT TTTTAAATTT TTTTTTTTTT TTTTTTTTTT TTTTGCTCCT AGTTAAACTA
  TTCATTAGCT TCCCAGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38051542	NES09390583	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27882319					SNP	T	T	T	T	A	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051542	NES09390583	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63778823 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	418 bp distal
Rr593619	regulatory region 593619	within coordinates
Rr593620	regulatory region 593620	751 bp proximal
Rr593621	regulatory region 593621	1585 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	Intron
Tssr42075	transcription start site region 42075	306 bp downstream
Tssr42076	transcription start site region 42076	337 bp downstream
Tssr42077	transcription start site region 42077	443 bp downstream
Tssr42078	transcription start site region 42078	514 bp downstream
Tssr42079	transcription start site region 42079	692 bp downstream
Tssr42080	transcription start site region 42080	710 bp downstream
Tssr42081	transcription start site region 42081	740 bp downstream