rs27882317 SNP Detail

Summary

• ID
  rs27882317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63779531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGATGGAGA AACTCTTCTC TGGGGGCGTG AGGCGAAGGG
  TGGCTGCAAG GGTGGGGGAG AGGTTCATTT TTCATCGCCT GGGATTAATC TGAGTGCAGA
  R
  AAATTGTAGC GAGATAGACG ATGGTTGATG TCAGCGGGTG GTAGGAAGGA GACAGTTCCG
  CGTGAGTGTA CACCAACCAC TTCTGTTTCC TTTAGGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38051540	NES09390585	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	G	G	G	G	A
ss45647371	mCV24477164	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27882317					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051540	NES09390585	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63779531 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	1126 bp distal
Rr593619	regulatory region 593619	673 bp distal
Rr593620	regulatory region 593620	43 bp proximal
Rr593621	regulatory region 593621	877 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	mRNA-UTR
Tssr42075	transcription start site region 42075	373 bp upstream
Tssr42076	transcription start site region 42076	348 bp upstream
Tssr42077	transcription start site region 42077	248 bp upstream
Tssr42078	transcription start site region 42078	172 bp upstream
Tssr42079	transcription start site region 42079	1 bp upstream
Tssr42080	transcription start site region 42080	2 bp downstream
Tssr42081	transcription start site region 42081	32 bp downstream