rs27882316 SNP Detail

Summary

• ID
  rs27882316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63779862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGCAT GATCCATGCT
  GGTGGCCCAG GAAGCTTCCA GATTAGTCTC TTTGCTGGGT CCCTGGAGAT GGCAGTCCTT
  TGTCAGCAGC ACAATGACTG TTGGGGTTGT CCAACAATTA CAGCATGCTC TAAACTGGAA
  ACATACCCAT TTCTGGGAAA GAAGAGCCCA CTGTTTGGGC ATTTACCTAC CTGGAGACAA
  R
  GTTGTGGCAG TAGGATATTT GAGGATAGTT TCAAAGACAT GGTGAGAGAA GAGGAATTTG
  GAAATAATTT GCTGTTGAAC CAAAGCTCCT CTATCTCTTG CAGGGTGCTC TCCAGGGCTG
  TTAAATTTGC CGATGAAACT GGCTTGCCCT AAAGTTCATA CTAGGGGAAG AAATTAGTGA
  GGGGGTCAGG AAGGGGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38051539	NES09390586	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27882316					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38051539	NES09390586	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63779862 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	1457 bp distal
Rr593619	regulatory region 593619	1004 bp distal
Rr593620	regulatory region 593620	29 bp distal
Rr593621	regulatory region 593621	546 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	278 bp upstream
Tssr42075	transcription start site region 42075	704 bp upstream
Tssr42076	transcription start site region 42076	679 bp upstream
Tssr42077	transcription start site region 42077	579 bp upstream
Tssr42078	transcription start site region 42078	503 bp upstream
Tssr42079	transcription start site region 42079	332 bp upstream
Tssr42080	transcription start site region 42080	307 bp upstream
Tssr42081	transcription start site region 42081	270 bp upstream