rs27879786 SNP Detail

Summary

• ID
  rs27879786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59600833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCATAGT TTCTGCTGAG
  TTGAGGGAGC GACTACCTCT TCACTCTTGG CTGGTCCAGA CCAGGGTGGG AACAGGAAAG
  TCCAGTTCAG AACAGATTTT CCGCATGCAG GGATGAGACT GTCAGCTACT GATTTGGTAA
  TGGCTGCAGA GAGGAGGGTC ACCTCCAGCC TTGACATTGT TTTAGACACT GGGAATACTG
  Y
  GACATATCAT GTAAGGAAGG AATATCATCT GCTTTCTAAT GCAGTGACAA AAACATTGGA
  AAGGCAGCTT CACATTTTGG AAACAGGAAG CTGAGGCCCA AAGGTGTGAA AGTTGCCAAA
  AGTCATGACC CCATTAGCTT AAAAATCCCA CTCACCCACC TTTCAATCCA GGGCTGGTTT
  GTTAGCCCGT GACCGGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010321	NES09392267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27879786					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010321	NES09392267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59600833 () rs orientation: forward

Symbol	Name	Function Class
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	1703 bp proximal