rs27879780 SNP Detail

Summary

• ID
  rs27879780
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59601151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTCATG ACCCCATTAG
  CTTAAAAATC CCACTCACCC ACCTTTCAAT CCAGGGCTGG TTTGTTAGCC CGTGACCGGC
  TTTTTCAACT TGCAAGACTA CTGTACAAAC TCTTGAACAT TCTACAGCAG AAATCAAAGC
  AGGTTTGCTG TGCTTCTCAG GAAGGACTTC TGCATGTGTA TTCTGTGTTG TGTAGCAGAG
  S
  AGTTTGCTTG TTGTCTCCCC GGTTCTGTGT CGAGGAACAG AGTGTTTGTT TCTGCTGCCC
  TCCCCACCCC TCTTCTGTCT ATAGATTCTG CCTATAGAAC ATTAGTGAGT CCCTGACCGT
  AGTCTCCTTT TTGCCACCTT GGTCATTTTG ACCACCTTGG TACGGACTTG CTATTTGCAT
  AGTCATATGG AGTCATATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38010315	NES09392273	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C		G	G	G	G		C
ss321141223	CHEV_4_59614023	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27879780					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010315	NES09392273	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59601151 () rs orientation: forward

Symbol	Name	Function Class
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	1385 bp proximal
Rr593096	regulatory region 593096	1760 bp proximal