rs27879776 SNP Detail

Summary

• ID
  rs27879776
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59601798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTCCCAC ATTTTATACA
  GTGAACACAC TGGTTTTGTG TGTGTTTGTG CAATAAAATG AATATATTCT TTTACAAGCT
  GTTTTCCAAT GAAGAGAAAA TCCCACACTG TATCTACCTT AAGAGATAAG AAACCACTAG
  AAATAGGGGT TAGGGCTTTA AAATGACCTG ATGGTAGAAG GTTGTTTCAG TTATTCTCCA
  S
  TTCCAAAGCA GGAAACTGAT TGTTTAAAAG GTAGTCTTAG AAATCAGAGT GAAGATCTTA
  TTCAGATATA TGACAGATGA TACAGGAGTA GAGTTCTTTA TTCTTTTTTA AAAATTAATA
  AATTATTTAT TTATTTTATT GGAATGCTCT ATCTGTATAT ATACCTGCAT GTCAGAATAT
  GGGATCAAAC AGAAGAGAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010311	NES09392277	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27879776					SNP	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010311	NES09392277	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59601798 () rs orientation: forward

Symbol	Name	Function Class
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	738 bp proximal
Rr593096	regulatory region 593096	1113 bp proximal