rs27879771 SNP Detail

Summary

• ID
  rs27879771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59603378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTTATT AGTCAGAGTA
  CCTGGCATAT GCAATATTCA ACAGTTAATA TTTGCAAGTT GTAAAACAAG TTCAGAGCTG
  TTCCATGACT GTGCCTGTGG GTAGGATATG TGGGAGAACC CAAATGAGAC GTACTCGGGA
  CCTTTGGATT TGGAACACTG TAATAATTCC TTTGGGGCTT TTGTGTCAGT GGGTGTTGTT
  Y
  TGGGCCCACC TCTAGCCTTG CACATGCTAG CAAGCACACA CTTGTACCCT GAAGCTGTCC
  TTCCAGCTCT TGGCTTTCTG AGTCAGGGTC TCACTATGTA GTAGTTTGGT GAACGCATGG
  TCCTCCTGCT GTGCTTCCTT AGCTCTGCGC TGCAGGTGTG TAGCACCACA CATGGCTCAT
  CTTAGGCTTT GAGATATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010306	NES09392191	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27879771					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010306	NES09392191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59603378 () rs orientation: forward

Symbol	Name	Function Class
Gm70234	predicted gene, 70234	1059 bp downstream
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	821 bp distal
Rr593096	regulatory region 593096	446 bp distal