rs27879770 SNP Detail

Summary

• ID
  rs27879770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59603421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATATTT GCAAGTTGTA
  AAACAAGTTC AGAGCTGTTC CATGACTGTG CCTGTGGGTA GGATATGTGG GAGAACCCAA
  ATGAGACGTA CTCGGGACCT TTGGATTTGG AACACTGTAA TAATTCCTTT GGGGCTTTTG
  TGTCAGTGGG TGTTGTTCTG GGCCCACCTC TAGCCTTGCA CATGCTAGCA AGCACACACT
  Y
  GTACCCTGAA GCTGTCCTTC CAGCTCTTGG CTTTCTGAGT CAGGGTCTCA CTATGTAGTA
  GTTTGGTGAA CGCATGGTCC TCCTGCTGTG CTTCCTTAGC TCTGCGCTGC AGGTGTGTAG
  CACCACACAT GGCTCATCTT AGGCTTTGAG ATATGATGTT ATTATATATA GATTTTTAAA
  TTTGTGGCTG GCAATCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010305	NES09392192	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27879770					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010305	NES09392192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59603421 () rs orientation: forward

Symbol	Name	Function Class
Gm70234	predicted gene, 70234	1016 bp downstream
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	864 bp distal
Rr593096	regulatory region 593096	489 bp distal