rs27866810 SNP Detail

Summary

• ID
  rs27866810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58973085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCACTCA TTCAATAGAT
  GAATGACGGA TACCTATGAC AACATGGATG GATATGGAAT CGCTCTGCTA AGTGAAAGAA
  TCCAGGCACA AAGGAACACA TTTTTGGGGG GAAGAAAACG GGAGGGGGTG ACTGATGATT
  AATGTTTCTT TGGGGAATGA TAAACATTCT AAAACCGCAG TCATATAGAC AGTCTGATAC
  Y
  AAAGTGGGTA AGATCTGAGC TGTAACTTCC TTTCTTTTGC TGTGCTGGGA CTGAATGCAG
  GCCTGTGTAC ATGGCTGGCA ACAGCTCTAT TACTGAGTTA TAGCTTCAGT CTAAAATTCT
  ACAGTTGGTT GGTTATTTAT TTATTTACTT ATTTACTTAT TCATTGCTTG ATAATGGAAG
  ACGTGGTCTC ACTAAGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38012245	NES09423277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27866810					SNP	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012245	NES09423277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58973085 () rs orientation: forward

Symbol	Name	Function Class
Ptgr1	prostaglandin reductase 1	Intron
Rr592954	regulatory region 592954	1475 bp proximal