rs27866802 SNP Detail

Summary

• ID
  rs27866802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58974180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAGAGA CAGATAAGGA
  GACTCTAGAA CAACCTTCAA AGACATGAGT CCAGTGGCTT ACTTCTTCCA GGTAAGGTCT
  TGCATTCTAG TTTGTCCTAC CTACCGACAG TGCCATCAGA CTATGAATCT ATCGGTAGTT
  GATCCACGGG CAAGGTCAGA CCCTGCCCCC TCCCCTATAA CCCAATCACT TCACCAAAGT
  Y
  CCACTTCTGA AGTAGGGCCA AGCCTTCAAT GTATGGGAAC AAATTTCCTA CCCAAACCAC
  ATACACCCCA CACATGAGGA ACTCCACAGT AACTCAACAA AACCCAAGGG TGAAACTGGT
  CCCTAAGCCA GACTAGAAAC CAGCTACAGC TGGCCTGACC GCTTAGCAGA TATCACCTCT
  GTCTGCTATG TTTGCCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38012237	NES09423263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27866802					SNP	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012237	NES09423263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58974180 () rs orientation: forward

Symbol	Name	Function Class
Ptgr1	prostaglandin reductase 1	Intron
Rr592954	regulatory region 592954	380 bp proximal