rs27866800 SNP Detail

Summary

• ID
  rs27866800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58974280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCGACAG TGCCATCAGA
  CTATGAATCT ATCGGTAGTT GATCCACGGG CAAGGTCAGA CCCTGCCCCC TCCCCTATAA
  CCCAATCACT TCACCAAAGT CCCACTTCTG AAGTAGGGCC AAGCCTTCAA TGTATGGGAA
  CAAATTTCCT ACCCAAACCA CATACACCCC ACACATGAGG AACTCCACAG TAACTCAACA
  R
  AACCCAAGGG TGAAACTGGT CCCTAAGCCA GACTAGAAAC CAGCTACAGC TGGCCTGACC
  GCTTAGCAGA TATCACCTCT GTCTGCTATG TTTGCCCTTC AACCCGCTGC TTTACTAACC
  TAGTCACCTG ACTGCCTGGC TTCTTCACTC TGGGGCACCT CTTCTTTTCT CCCAAAGACA
  TATCCTATCC CAGTGCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss38012235	NES09423265	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27866800					SNP	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012235	NES09423265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58974280 () rs orientation: forward

Symbol	Name	Function Class
Ptgr1	prostaglandin reductase 1	Intron
Rr592954	regulatory region 592954	280 bp proximal