rs27866799 SNP Detail

Summary

• ID
  rs27866799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58974385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAAGTA GGGCCAAGCC
  TTCAATGTAT GGGAACAAAT TTCCTACCCA AACCACATAC ACCCCACACA TGAGGAACTC
  CACAGTAACT CAACAAAACC CAAGGGTGAA ACTGGTCCCT AAGCCAGACT AGAAACCAGC
  TACAGCTGGC CTGACCGCTT AGCAGATATC ACCTCTGTCT GCTATGTTTG CCCTTCAACC
  Y
  GCTGCTTTAC TAACCTAGTC ACCTGACTGC CTGGCTTCTT CACTCTGGGG CACCTCTTCT
  TTTCTCCCAA AGACATATCC TATCCCAGTG CTGTGGTCTT TGTTGTTGCT GTGTTTGGGG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA TGCAGGTGCC TAGGAAGACC
  AGAAGAGGGC ATCAGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38012234	NES09423266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27866799					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012234	NES09423266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58974385 () rs orientation: forward

Symbol	Name	Function Class
Ptgr1	prostaglandin reductase 1	Intron
Rr592954	regulatory region 592954	175 bp proximal