rs27866725 SNP Detail

Summary

• ID
  rs27866725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58993310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAACAA TTCACGGTAT
  CCTGACAGAA ATGCATAGCT TGGGGTTGGA ACTTGAGGAG AAAGCAGACA AACTCATGCT
  CAAAACCCTA TAAAACAAAG AGCGTGTGTT TTAATCTTTC CAAGCGTAAA GGTCATAGGA
  GACAGAGAAA GACTTAGAGA GTGTTCTAGA ACAAGAGAAC AAAACAAACA TGACAACAGA
  Y
  GACCCTGCGT TACTGTGGAG AGGAGCGTGG GGTTAGCTAC AACAGACGAG GCTGAAAGAG
  CTGCTGGGGT CTGAACACGG ACTGTGGATT CAGGGAATCT GGCCAACCAC GAATGGCCTC
  AGAGCCAAAC TACTGGATAG ATTTTTGGGT GTTCTCAACA GAAAAGGATG AGTGTGTGAG
  GCGAAAGGAA GCAGAAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38012160	NES09422520	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27866725					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012160	NES09422520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58993310 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	1905 bp upstream
Gm68783	predicted gene, 68783	within coordinates
Rr592961	regulatory region 592961	1943 bp distal
Rr592962	regulatory region 592962	1358 bp distal
Rr592963	regulatory region 592963	779 bp distal
Rr592964	regulatory region 592964	1669 bp proximal
Rr592965	regulatory region 592965	1815 bp proximal
Tssr37405	transcription start site region 37405	999 bp upstream