rs27866723 SNP Detail

Summary

• ID
  rs27866723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58993526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGGAG CGTGGGGTTA
  GCTACAACAG ACGAGGCTGA AAGAGCTGCT GGGGTCTGAA CACGGACTGT GGATTCAGGG
  AATCTGGCCA ACCACGAATG GCCTCAGAGC CAAACTACTG GATAGATTTT TGGGTGTTCT
  CAACAGAAAA GGATGAGTGT GTGAGGCGAA AGGAAGCAGA AACCCACTAC GGTTCTCTGA
  R
  GGTCAAAAGT TAAACAGAGT GGCTCACGAT TAGGTTACTC CAGTTCCCCG GGGATTTGAT
  GTCCTCTGCA GGCAAATCAC TCACACACAC TGAAAACCAA AAGACAACAA ATAACACTCT
  GAGTTCCAGG CCAGCCTGAT CTACATAGCA GTTCCGGGGA CGCTGCCTGT GGGTCTTCAC
  TTACCGGAGA GGGGAGGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38012158	NES09422523	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27866723					SNP	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012158	NES09422523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58993526 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	1689 bp upstream
Gm68783	predicted gene, 68783	within coordinates
Rr592962	regulatory region 592962	1574 bp distal
Rr592963	regulatory region 592963	995 bp distal
Rr592964	regulatory region 592964	1453 bp proximal
Rr592965	regulatory region 592965	1599 bp proximal
Tssr37405	transcription start site region 37405	783 bp upstream