rs27866722 SNP Detail

Summary

• ID
  rs27866722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58995219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCCTCT CACCTTCTCT
  AGTCAAGGTC AGTCCTGTGA CTCATACGCC CTACCCTGTT GGCCCCGCCA TGTTCTGTTT
  CTAAGAGGTA GAAGTGAGAT TTTTTTTTTC CTGATAATGA AACCTGCTAA AAGCTTTGCT
  TAGGATGGAG AATTGTCAAA TTAATCTAAT GTTCTTTGAT CTGTCTGGAA GGCTTTAAAG
  R
  AGAAATGGTT CCTAGATGAG TCCTCCTGTC CGAGACTGGG TTTTGCTGGA GCCGGAACTT
  CAAGGTTGGT GACGCTAACT GCCTCCCTTC CCCTGCCAGG CAGTGGGGAC AGCCGCTCTC
  CAGAACAAGC AGCAGCTGTT GGGAGTTGGC CTCTCAGACT GTTACAATGT ATGAGGTGTT
  TTCCTTTTTG TCTGCTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38012157	NES09422428	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27866722					SNP	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012157	NES09422428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58995219 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	mRNA-UTR
Gm68783	predicted gene, 68783	460 bp downstream
Rr592964	regulatory region 592964	95 bp distal
Rr592965	regulatory region 592965	within coordinates
Rr592966	regulatory region 592966	1913 bp proximal
Tssr37405	transcription start site region 37405	898 bp downstream