rs27866721 SNP Detail

Summary

• ID
  rs27866721
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58995249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCTGTGA CTCATACGCC
  CTACCCTGTT GGCCCCGCCA TGTTCTGTTT CTAAGAGGTA GAAGTGAGAT TTTTTTTTTC
  CTGATAATGA AACCTGCTAA AAGCTTTGCT TAGGATGGAG AATTGTCAAA TTAATCTAAT
  GTTCTTTGAT CTGTCTGGAA GGCTTTAAAG GAGAAATGGT TCCTAGATGA GTCCTCCTGT
  S
  CGAGACTGGG TTTTGCTGGA GCCGGAACTT CAAGGTTGGT GACGCTAACT GCCTCCCTTC
  CCCTGCCAGG CAGTGGGGAC AGCCGCTCTC CAGAACAAGC AGCAGCTGTT GGGAGTTGGC
  CTCTCAGACT GTTACAATGT ATGAGGTGTT TTCCTTTTTG TCTGCTGATT AGCACCGTAA
  GAGTGGGGGA GCTGTGCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38012156	NES09422430	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27866721					SNP	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012156	NES09422430	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58995249 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	mRNA-UTR
Gm68783	predicted gene, 68783	490 bp downstream
Rr592964	regulatory region 592964	125 bp distal
Rr592965	regulatory region 592965	within coordinates
Rr592966	regulatory region 592966	1883 bp proximal
Tssr37405	transcription start site region 37405	928 bp downstream