rs27866719 SNP Detail

Summary

• ID
  rs27866719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58995476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTT TAGTTCAGAT GTCAGTACTC
  Y
  CAGGGAGGTG ATTTTAGCTT CTATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38012154	NES09422434	PERLEGEN	MM_PANEL2	f	SNP		T		T	C
ss146398637	ENSMUSSNP6560992	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321139883	CHEV_4_59008348	CHEVERUD	SCREENING_POP	f	SNP			C			T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27866719					SNP	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012154	NES09422434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58995476 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	Intron
Gm68783	predicted gene, 68783	717 bp downstream
Rr592964	regulatory region 592964	352 bp distal
Rr592965	regulatory region 592965	within coordinates
Rr592966	regulatory region 592966	1656 bp proximal
Tssr37405	transcription start site region 37405	1155 bp downstream