rs27866718 SNP Detail

Summary

• ID
  rs27866718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58995562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGGCCT CTCAGACTGT
  TACAATGTAT GAGGTGTTTT CCTTTTTGTC TGCTGATTAG CACCGTAAGA GTGGGGGAGC
  TGTGCAGTTT GGTTTAGTTC AGATGTCAGT ACTCTCAGGG AGGTGATTTT AGCTTCTATG
  TTTTACTCCC CCTATCCGCT CCCCCACTCG CCCCCACCTC ATCAGCCATC CTCTGAGAGC
  Y
  TAGCAGAAAT GAAGCAGCCT CTACCTTCGC CACACCTTCC TTCCCTCCTC CACACCTCCC
  CTCCTCCACA CTGTGTGCAG ATGAATAGTT CTAGAGTAAA CCACACAGCC TAGACTGACC
  TGACGGGTGT CCCTCTAATC ACAAACAACA CAGGGGCACA CAAGAATTCC ACATGCTTTC
  TCCCACCTGG GTTCTGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38012153	NES09422437	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27866718					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012153	NES09422437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58995562 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	Intron
Gm68783	predicted gene, 68783	803 bp downstream
Rr592964	regulatory region 592964	438 bp distal
Rr592965	regulatory region 592965	within coordinates
Rr592966	regulatory region 592966	1570 bp proximal
Tssr37405	transcription start site region 37405	1241 bp downstream