rs27866716 SNP Detail

Summary

• ID
  rs27866716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58996007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATCAAAG CCGTGGATCA
  AAAATCTCAG CTTTTAATGA TCGAGATCAC AAACTTCTTT GCACCTGTGT CCATCTTTCT
  GCCACTGATA ACAGGAGGCT GCTCTCCTGA AAGGACTGCG TCTTCATCTT CTAATTTCAC
  TGGGCTACTT CCGGTATTCC TTCTCTCTTG CAAAGCAAGA ATCGGTTTTG ATTCTGTATG
  R
  AGCTAAGGGG CTCTACACAA GAAAATGGAA TATTTCCCAC TTCTAAAACT ATGGGCCACA
  CTTCGTATTA AGAGGAACCA TCTTAGCCGG GCGTGGTGGC GCACGCCTTT AATCCCAGCA
  CTCGGGAGGC AGAGGCAGGC AGATTTCTGA GTTCGCGGCC AGCCTGGTCT ACAGAGTGAG
  TTCCAGGACA GCCAGGGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38012151	NES09422441	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27866716					SNP	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012151	NES09422441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58996007 () rs orientation: forward

Symbol	Name	Function Class
Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	Intron
Gm68783	predicted gene, 68783	1248 bp downstream
Rr592964	regulatory region 592964	883 bp distal
Rr592965	regulatory region 592965	239 bp distal
Rr592966	regulatory region 592966	1125 bp proximal
Rr592967	regulatory region 592967	1601 bp proximal
Tssr37405	transcription start site region 37405	1686 bp downstream