rs27866113 SNP Detail

Summary

• ID
  rs27866113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58204607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGAAT ACAAGAGTGG
  GTAGATGGGT GGGGGAGTAC CCTCATAGAG GTAGTAGGAG GGGGGATGGG AGAGGGGTCT
  GAAGGGGAGA CCTGGAAAGG GGAAAACATT CGAAATGTAA ATAAAGAAAA TATCCAATAA
  AAAATATCAT GTATTCAGAT GCACATAACA GGAGAATGTA AATTTATACA ACTCTCCAAT
  R
  GAGGAGGTGG CAATGTGGAC CAAGACCTTT CAAATGTTCA TGTATTTTAC TAAATAAGGA
  ATTTAGAAAG CCCTCCTAAA GAAGCAGTCA AAGAGGGCTT CCTAAACTCC TTATTTAAAA
  GGCACGAATG TGTGCTCCCC ACACAGCAGT TCTCAGCACT CAGTTGTCAT GAGGCTGGAG
  ATAGGGCTCA GTGGTTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38015153	NES09395723	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27866113					SNP	A	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015153	NES09395723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58204607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			1091 bp proximal
Rr592872	regulatory region 592872			1979 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1716 bp downstream
Tssr41871	transcription start site region 41871			1741 bp downstream
Tssr41872	transcription start site region 41872			1897 bp downstream
Tssr41873	transcription start site region 41873			1926 bp downstream
Tssr41874	transcription start site region 41874			1951 bp downstream
Tssr41875	transcription start site region 41875			1971 bp downstream
Tssr41876	transcription start site region 41876			1992 bp downstream