rs27866111 SNP Detail

Summary

• ID
  rs27866111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCACCCC GACTTCCGCA
  TGACAGCTCA CAACTGCCTG TAACTGCAGT TCCAAGGGGA GCCAATACTG TCATGCCACA
  GGATACCATG AATTAATGTA CATTTGATCA TATTCAACAG CTGAAGAATG CAGGCTGCAA
  AACCGTAGGT TAGCAAGTTT GTTGAAATAA CATATGAGTA ACATACTGGA CAACATTCAA
  Y
  TGTATATCCG CTGGAATTTT AAGGATAAAG AGATTATTCG GATTCCCCAT TCTCTTTTGT
  TTCATTTATT CTACAAACAT TGACTTGATG GGTTGCCTTA AATATTTCTC AGTATTCCAA
  ATTATGACCT ACTTTGTATT ACTTTGTAGT TAGGAAAAAG ACTCATTTTT ATAAAAGTAA
  TATAAATTAC ATTACTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015151	NES09395634	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866111					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015151	NES09395634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			642 bp proximal
Rr592872	regulatory region 592872			1530 bp proximal
Rr592873	regulatory region 592873			1586 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1267 bp downstream
Tssr41871	transcription start site region 41871			1292 bp downstream
Tssr41872	transcription start site region 41872			1448 bp downstream
Tssr41873	transcription start site region 41873			1477 bp downstream
Tssr41874	transcription start site region 41874			1502 bp downstream
Tssr41875	transcription start site region 41875			1522 bp downstream
Tssr41876	transcription start site region 41876			1543 bp downstream
Tssr41877	transcription start site region 41877			1583 bp downstream
Tssr41878	transcription start site region 41878			1614 bp downstream
Tssr41879	transcription start site region 41879			1630 bp downstream
Tssr41880	transcription start site region 41880			1712 bp downstream