rs27866110 SNP Detail

Summary

• ID
  rs27866110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA GAGATTATTC GGATTCCCCA
  Y
  TCTCTTTTGT TTCATTTATT CTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38015150	NES09395637	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	C	T	T	T		C	C	T		C
ss146390673	ENSMUSSNP6336199	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
ss321137341	CHEV_4_58217978	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27866110					SNP	C	T	T	T	T	T	C	T	T	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015150	NES09395637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			592 bp proximal
Rr592872	regulatory region 592872			1480 bp proximal
Rr592873	regulatory region 592873			1536 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1217 bp downstream
Tssr41871	transcription start site region 41871			1242 bp downstream
Tssr41872	transcription start site region 41872			1398 bp downstream
Tssr41873	transcription start site region 41873			1427 bp downstream
Tssr41874	transcription start site region 41874			1452 bp downstream
Tssr41875	transcription start site region 41875			1472 bp downstream
Tssr41876	transcription start site region 41876			1493 bp downstream
Tssr41877	transcription start site region 41877			1533 bp downstream
Tssr41878	transcription start site region 41878			1564 bp downstream
Tssr41879	transcription start site region 41879			1580 bp downstream
Tssr41880	transcription start site region 41880			1662 bp downstream