rs27866108 SNP Detail

Summary

• ID
  rs27866108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTGTAA GTCGGAGACC
  AGTCTTGGAA ACACGAGAGA GCCTATCACA AACTAGTAAA CAATTAAAGT CTGGAAGCAA
  AGTTACGAAG TCTATGTCAT GAAAAAGAAT TAGGACTGTC CTCAGCTCAT TACATGTCCC
  ATCTTCACAA ATATTTGTTA ACCATACCTG TTTCAGCTTG TATAAACAGT TTCCTCACAA
  R
  CTTAAGTGAG CTTAAAGGTC CCTTCCTACT AGGGTCCCTC AAGGAACCCT TTAAGAAATG
  TGACACCTCC TTAAGCATTT AAAAACCCAT TTCAGTCTGG ACCTTCACTA GGGCAGCAGG
  AGAATGGTCA TATTTGTGCT TCTTGGGACG CTGGCTCCCC TTGGACACCT TAAGCCTTGC
  AGGAGCTGAA CCAGGCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38015148	NES09395582	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A		G	G	A	G		G
ss321137345	CHEV_4_58218448	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27866108					SNP	G	A	A	A	A	A	G	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015148	NES09395582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			122 bp proximal
Rr592872	regulatory region 592872			1010 bp proximal
Rr592873	regulatory region 592873			1066 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			747 bp downstream
Tssr41871	transcription start site region 41871			772 bp downstream
Tssr41872	transcription start site region 41872			928 bp downstream
Tssr41873	transcription start site region 41873			957 bp downstream
Tssr41874	transcription start site region 41874			982 bp downstream
Tssr41875	transcription start site region 41875			1002 bp downstream
Tssr41876	transcription start site region 41876			1023 bp downstream
Tssr41877	transcription start site region 41877			1063 bp downstream
Tssr41878	transcription start site region 41878			1094 bp downstream
Tssr41879	transcription start site region 41879			1110 bp downstream
Tssr41880	transcription start site region 41880			1192 bp downstream