rs27866105 SNP Detail

Summary

• ID
  rs27866105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTCCCA TCTTCACAAA
  TATTTGTTAA CCATACCTGT TTCAGCTTGT ATAAACAGTT TCCTCACAAA CTTAAGTGAG
  CTTAAAGGTC CCTTCCTACT AGGGTCCCTC AAGGAACCCT TTAAGAAATG TGACACCTCC
  TTAAGCATTT AAAAACCCAT TTCAGTCTGG ACCTTCACTA GGGCAGCAGG AGAATGGTCA
  Y
  ATTTGTGCTT CTTGGGACGC TGGCTCCCCT TGGACACCTT AAGCCTTGCA GGAGCTGAAC
  CAGGCTAGAG AAGGGGTTGG CAGCGGTGGG CAGGAGGGGC CCCAGGCCGC TGGCCTGGGT
  GTGTGGGGGT CTTACCGCGG CTTGCTGGAA GGCGCCCTTG GTATAGGTGC CACCACCGCG
  GTAGGTGATG GCCGGGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015145	NES09395585	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866105					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015145	NES09395585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			within coordinates
Rr592872	regulatory region 592872			879 bp proximal
Rr592873	regulatory region 592873			935 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			616 bp downstream
Tssr41871	transcription start site region 41871			641 bp downstream
Tssr41872	transcription start site region 41872			797 bp downstream
Tssr41873	transcription start site region 41873			826 bp downstream
Tssr41874	transcription start site region 41874			851 bp downstream
Tssr41875	transcription start site region 41875			871 bp downstream
Tssr41876	transcription start site region 41876			892 bp downstream
Tssr41877	transcription start site region 41877			932 bp downstream
Tssr41878	transcription start site region 41878			963 bp downstream
Tssr41879	transcription start site region 41879			979 bp downstream
Tssr41880	transcription start site region 41880			1061 bp downstream